Build:
- 0
2026-03-07 12:03.11: New job: test biotk.0.4, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/29486/head (55e5209bbfb780103122968d39886bcc80fd10a3)
on ubuntu-24.04-ocaml-4.14/riscv64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/29486/head" && git reset --hard 55e5209b
git fetch origin master
git merge --no-edit ffb54b9bdd3fc5ecfdac3f4561fc52c30c810bd3
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:ubuntu-24.04-ocaml-4.14@sha256:d4d1cd78e191a44683f7dc3fa6cc7e28c5b33c8d35ce7cc23eeaca7968f04536
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn biotk.0.4 0.4
RUN opam reinstall biotk.0.4; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"ubuntu-24.04\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'biotk.0.4' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test biotk.0.4) || true
RUN opam reinstall --with-test --verbose biotk.0.4; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"ubuntu-24.04\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'biotk.0.4' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2026-03-07 12:03.11: Using cache hint "ocaml/opam:ubuntu-24.04-ocaml-4.14@sha256:d4d1cd78e191a44683f7dc3fa6cc7e28c5b33c8d35ce7cc23eeaca7968f04536-biotk.0.4-55e5209bbfb780103122968d39886bcc80fd10a3"
2026-03-07 12:03.11: Using OBuilder spec:
((from ocaml/opam:ubuntu-24.04-ocaml-4.14@sha256:d4d1cd78e191a44683f7dc3fa6cc7e28c5b33c8d35ce7cc23eeaca7968f04536)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn biotk.0.4 0.4"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall biotk.0.4;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-24.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'biotk.0.4' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test biotk.0.4) || true"))
(run (shell "opam reinstall --with-test --verbose biotk.0.4;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-24.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'biotk.0.4' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2026-03-07 12:03.11: Waiting for resource in pool OCluster
2026-03-07 12:03.11: Waiting for worker…
2026-03-07 12:25.14: Got resource from pool OCluster
Building on riscv-bm-03.sw.ci.dev
All commits already cached
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HEAD is now at ffb54b9bdd Merge pull request #29488 from alan-j-hu/release-textmate-language-0.5.0
Merge made by the 'ort' strategy.
packages/biotk/biotk.0.4/opam | 61 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 61 insertions(+)
create mode 100644 packages/biotk/biotk.0.4/opam
(from ocaml/opam:ubuntu-24.04-ocaml-4.14@sha256:d4d1cd78e191a44683f7dc3fa6cc7e28c5b33c8d35ce7cc23eeaca7968f04536)
2026-03-07 12:25.26 ---> using "ce33d2d432e9b46d8f23350e176daa8b46dee3c91a97e7cfeaf526f78af9698e" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2026-03-07 12:25.26 ---> using "1f5694f9c8f55ddf908991c8587cc282eb6c9cbbf4593f6320ae60261fa8a759" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2026-03-07 12:25.26 ---> using "0a3ff36c15ec9517ab574a5428eff2c5bc3e129d378ecd35f28d8698262e1a06" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0
# self-upgrade no
# system arch=riscv64 os=linux os-distribution=ubuntu os-version=24.04
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 3
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2026-03-07 12:25.26 ---> using "5adf3b70adffff58004c5603abc2a8e28afb20073bc4f6778f0889d1b0b6af34" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2026-03-07 12:25.26 ---> using "b789a0f9e28a5dd472843fdbe06e0006104b7bc316797e2a463f14b9dc23355d" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2026-03-07 12:25.31 ---> using "6eaad1b420ff6ec8a089d1320c7079b72599b5a24d3bf419552f6ef3bfc5831e" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2026-03-07 12:25.31 ---> using "1569b9a81bc921c04126e4cd821255d0f896988f588ba5457000cf21d9170d9c" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://ports.ubuntu.com/ubuntu-ports noble InRelease
- Get:2 http://ports.ubuntu.com/ubuntu-ports noble-updates InRelease [126 kB]
- Get:3 http://ports.ubuntu.com/ubuntu-ports noble-backports InRelease [126 kB]
- Get:4 http://ports.ubuntu.com/ubuntu-ports noble-security InRelease [126 kB]
- Get:5 http://ports.ubuntu.com/ubuntu-ports noble-updates/main riscv64 Packages [939 kB]
- Get:6 http://ports.ubuntu.com/ubuntu-ports noble-updates/universe riscv64 Packages [1523 kB]
- Get:7 http://ports.ubuntu.com/ubuntu-ports noble-security/universe riscv64 Packages [972 kB]
- Get:8 http://ports.ubuntu.com/ubuntu-ports noble-security/main riscv64 Packages [608 kB]
- Fetched 4420 kB in 2s (1800 kB/s)
- Reading package lists...
-
2026-03-07 12:25.31 ---> using "f9de913fbaf965b73bc046bc4a90cc18969ad29c6eb6a22f58684041ceda2752" from cache
/home/opam: (run (shell "opam pin add -k version -yn biotk.0.4 0.4"))
biotk is now pinned to version 0.4
2026-03-07 12:25.31 ---> using "c75c7d5d32a2b0b2f7f73e9438a046a2d4d07efc7689f6173fdb9b94af9bb562" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall biotk.0.4;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-24.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'biotk.0.4' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
biotk.0.4 is not installed. Install it? [Y/n] y
* Incompatible packages:
- (invariant) -> ocaml-base-compiler = 4.14.2
- biotk >= 0.4 -> core_unix >= v0.16.0 -> ocaml >= 5.1.0 -> ocaml-variants >= 5.1.0~
You can temporarily relax the switch invariant with `--update-invariant'
* Missing dependency:
- biotk >= 0.4 -> core_unix >= v0.16.0 -> ocaml_intrinsics >= v0.16
unmet availability conditions, e.g. 'arch = "x86_64" & os != "win32"'
* Missing dependency:
- biotk >= 0.4 -> core_unix >= v0.16.0 -> ocaml >= 5.1.0 -> ocaml-variants >= 5.1.0~ -> system-msvc
unmet availability conditions: 'os = "win32"'
No solution found, exiting
"/usr/bin/env" "bash" "-c" "opam reinstall biotk.0.4;
res=$?;
test "$res" != 31 && exit "$res";
export OPAMCLI=2.0;
build_dir=$(opam var prefix)/.opam-switch/build;
failed=$(ls "$build_dir");
partial_fails="";
for pkg in $failed; do
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"ubuntu-24.04\""; then
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.";
fi;
test "$pkg" != 'biotk.0.4' && partial_fails="$partial_fails $pkg";
done;
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}";
exit 1" failed with exit status 20
2026-03-07 12:26.43: Job failed: Failed: Build failed
2026-03-07 12:26.43: Log analysis:
2026-03-07 12:26.43: >>>
No solution found, exiting
(score = 100)
2026-03-07 12:26.43: [SKIP] Package not available