Build:
- 0
2025-12-11 02:46.28: New job: test lbvs_consent.2.1.2 with dune-configurator.3.21.0~alpha3, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/29070/head (a95df9014bc79103fde668cf2adbe6680fd2f9cf)
on debian-13-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/29070/head" && git reset --hard a95df901
git fetch origin master
git merge --no-edit 810e1f14b7fa6411c66a3549f4c2aff47c52fc36
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-13-ocaml-4.14@sha256:277168101f7d4ebc452a75f825628d280c76dd0be7d8bcb58c24a5e50fe3d10d
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn dune-configurator.3.21.0~alpha3 3.21.0~alpha3
RUN opam reinstall dune-configurator.3.21.0~alpha3; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'dune-configurator.3.21.0~alpha3' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall lbvs_consent.2.1.2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'lbvs_consent.2.1.2' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test lbvs_consent.2.1.2) || true
RUN opam reinstall --with-test --verbose lbvs_consent.2.1.2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'lbvs_consent.2.1.2' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2025-12-11 02:46.28: Using cache hint "ocaml/opam:debian-13-ocaml-4.14@sha256:277168101f7d4ebc452a75f825628d280c76dd0be7d8bcb58c24a5e50fe3d10d-dune-configurator.3.21.0~alpha3-lbvs_consent.2.1.2-a95df9014bc79103fde668cf2adbe6680fd2f9cf"
2025-12-11 02:46.28: Using OBuilder spec:
((from ocaml/opam:debian-13-ocaml-4.14@sha256:277168101f7d4ebc452a75f825628d280c76dd0be7d8bcb58c24a5e50fe3d10d)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn dune-configurator.3.21.0~alpha3 3.21.0~alpha3"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune-configurator.3.21.0~alpha3;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune-configurator.3.21.0~alpha3' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall lbvs_consent.2.1.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test lbvs_consent.2.1.2) || true"))
(run (shell "opam reinstall --with-test --verbose lbvs_consent.2.1.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2025-12-11 02:46.28: Waiting for resource in pool OCluster
2025-12-11 08:43.45: Waiting for worker…
2025-12-11 08:46.31: Got resource from pool OCluster
Building on laodoke.caelum.ci.dev
All commits already cached
Updating files: 69% (13123/19017)
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Updating files: 100% (19017/19017), done.
HEAD is now at 810e1f14b7 Merge pull request #29066 from gares/release-elpi-v3.4.4
Updating 810e1f14b7..a95df9014b
Fast-forward
.../chrome-trace/chrome-trace.3.21.0~alpha3/opam | 41 ++++++++++++
.../dune-action-plugin.3.21.0~alpha3/opam | 54 ++++++++++++++++
.../dune-build-info.3.21.0~alpha3/opam | 47 ++++++++++++++
.../dune-configurator.3.21.0~alpha3/opam | 51 +++++++++++++++
packages/dune-glob/dune-glob.3.21.0~alpha3/opam | 44 +++++++++++++
.../dune-private-libs.3.21.0~alpha3/opam | 52 +++++++++++++++
.../dune-rpc-lwt/dune-rpc-lwt.3.21.0~alpha3/opam | 43 +++++++++++++
packages/dune-rpc/dune-rpc.3.21.0~alpha3/opam | 46 +++++++++++++
packages/dune-site/dune-site.3.21.0~alpha3/opam | 39 +++++++++++
packages/dune/dune.3.21.0~alpha3/opam | 75 ++++++++++++++++++++++
packages/dyn/dyn.3.21.0~alpha3/opam | 42 ++++++++++++
packages/fs-io/fs-io.3.21.0~alpha3/opam | 40 ++++++++++++
packages/ocamlc-loc/ocamlc-loc.3.21.0~alpha3/opam | 45 +++++++++++++
packages/ordering/ordering.3.21.0~alpha3/opam | 40 ++++++++++++
packages/stdune/stdune.3.21.0~alpha3/opam | 48 ++++++++++++++
.../top-closure/top-closure.3.21.0~alpha3/opam | 39 +++++++++++
packages/xdg/xdg.3.21.0~alpha3/opam | 41 ++++++++++++
17 files changed, 787 insertions(+)
create mode 100644 packages/chrome-trace/chrome-trace.3.21.0~alpha3/opam
create mode 100644 packages/dune-action-plugin/dune-action-plugin.3.21.0~alpha3/opam
create mode 100644 packages/dune-build-info/dune-build-info.3.21.0~alpha3/opam
create mode 100644 packages/dune-configurator/dune-configurator.3.21.0~alpha3/opam
create mode 100644 packages/dune-glob/dune-glob.3.21.0~alpha3/opam
create mode 100644 packages/dune-private-libs/dune-private-libs.3.21.0~alpha3/opam
create mode 100644 packages/dune-rpc-lwt/dune-rpc-lwt.3.21.0~alpha3/opam
create mode 100644 packages/dune-rpc/dune-rpc.3.21.0~alpha3/opam
create mode 100644 packages/dune-site/dune-site.3.21.0~alpha3/opam
create mode 100644 packages/dune/dune.3.21.0~alpha3/opam
create mode 100644 packages/dyn/dyn.3.21.0~alpha3/opam
create mode 100644 packages/fs-io/fs-io.3.21.0~alpha3/opam
create mode 100644 packages/ocamlc-loc/ocamlc-loc.3.21.0~alpha3/opam
create mode 100644 packages/ordering/ordering.3.21.0~alpha3/opam
create mode 100644 packages/stdune/stdune.3.21.0~alpha3/opam
create mode 100644 packages/top-closure/top-closure.3.21.0~alpha3/opam
create mode 100644 packages/xdg/xdg.3.21.0~alpha3/opam
(from ocaml/opam:debian-13-ocaml-4.14@sha256:277168101f7d4ebc452a75f825628d280c76dd0be7d8bcb58c24a5e50fe3d10d)
2025-12-11 08:46.45 ---> using "d81b3b20b9dbe813f4813251eb45f7f230344599357169e34b0d2f872bf65895" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-12-11 08:46.45 ---> using "4c0c738834a7be54719ab9b07c911eba51e45ad4298c42597f7d3da72b1c15d4" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2025-12-11 08:46.45 ---> using "8bb6d27bb5f7ebe9771219e3ecd730184d5e10ab877134c11c12ee3b1a6d3b96" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=13
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 71
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2025-12-11 08:46.45 ---> using "35019bd57e8933485bd938828fe288c3674216a4757e13b1dac8ce6b21035ac2" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2025-12-11 08:46.45 ---> using "e09ab9992a764acab15da9cff99e3d4d978b8a77f33714cc5d19d16d3539eb49" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2025-12-11 08:46.46 ---> using "8f784899c04798d44128ca0480da55c2b9cf6d274974843ef0505a70d687f2db" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2025-12-11 08:46.46 ---> using "2b089ce953d9701360553588b495e1bed1b68a44304bde1817c2d61d9d0cfb13" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian trixie InRelease
- Get:2 http://deb.debian.org/debian trixie-updates InRelease [47.3 kB]
- Get:3 http://deb.debian.org/debian-security trixie-security InRelease [43.4 kB]
- Get:4 http://deb.debian.org/debian-security trixie-security/main amd64 Packages [82.1 kB]
- Fetched 173 kB in 0s (411 kB/s)
- Reading package lists...
-
2025-12-11 08:46.46 ---> using "66aa292a4a8c262cd0de67bf9051bc0bb23ef81009eeb9a242c201bbf02a4d3c" from cache
/home/opam: (run (shell "opam pin add -k version -yn dune-configurator.3.21.0~alpha3 3.21.0~alpha3"))
dune-configurator is now pinned to version 3.21.0~alpha3
2025-12-11 08:46.46 ---> using "ba7e265cc9fa3a24a4f366d35f981c9be428e499eeb68655bb78e920ec0635bb" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune-configurator.3.21.0~alpha3;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune-configurator.3.21.0~alpha3' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
dune-configurator.3.21.0~alpha3 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 3 packages
- install csexp 1.5.2 [required by dune-configurator]
- install dune 3.21.0~alpha3 [required by dune-configurator]
- install dune-configurator 3.21.0~alpha3 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved csexp.1.5.2 (cached)
-> retrieved dune.3.21.0~alpha3, dune-configurator.3.21.0~alpha3 (cached)
-> installed dune.3.21.0~alpha3
-> installed csexp.1.5.2
-> installed dune-configurator.3.21.0~alpha3
Done.
# To update the current shell environment, run: eval $(opam env)
2025-12-11 08:46.46 ---> using "0a79edf45ff69d85a85b5b2da96ef74fc1ca6f775d07bb85894a17548990487c" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall lbvs_consent.2.1.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
lbvs_consent.2.1.2 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 41 packages
- install base-bytes base [required by dokeysto]
- install batteries 3.10.0 [required by lbvs_consent]
- install bitv 2.1 [required by lbvs_consent]
- install camlp-streams 5.0.1 [required by batteries]
- install camltc 0.9.8 [required by dokeysto_camltc]
- install camlzip 1.13 [required by lbvs_consent]
- install conf-bash 1 [required by camltc]
- install conf-boost 1 [required by lbvs_consent]
- install conf-openbabel 0.1 [required by lbvs_consent]
- install conf-pkg-config 4 [required by lbvs_consent]
- install conf-python-3 9.0.0 [required by lbvs_consent]
- install conf-rdkit 1 [required by lbvs_consent]
- install conf-zlib 1 [required by camlzip]
- install cpm 12.2.0 [required by lbvs_consent]
- install cppo 1.8.0 [required by lwt]
- install dokeysto 4.0.2 [required by dokeysto_camltc]
- install dokeysto_camltc 4.0.2 [required by lbvs_consent]
- install dolog 6.0.0 [required by lbvs_consent]
- install extunix 0.4.4 [required by dokeysto]
- install lbvs_consent 2.1.2
- install logs 0.10.0 [required by camltc]
- install lwt 5.9.2 [required by camltc]
- install minicli 5.0.2 [required by lbvs_consent]
- install minivpt 2.0.0 [required by lbvs_consent]
- install num 1.6 [required by batteries]
- install obuild 0.1.11 [required by minivpt]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ocamlbuild 0.16.1 [required by logs]
- install ocamlfind 1.9.8 [required by camlzip, batteries, minivpt]
- install ocplib-endian 1.2 [required by lwt]
- install ounit2 2.2.7 [required by qcheck-ounit]
- install parmap 1.2.5 [required by lbvs_consent]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.37.0 [required by extunix]
- install qcheck 0.27 [required by lbvs_consent]
- install qcheck-core 0.27 [required by qcheck]
- install qcheck-ounit 0.27 [required by qcheck]
- install seq base [required by ounit2]
- install sexplib0 v0.17.0 [required by ppxlib]
- install stdlib-shims 0.3.0 [required by ounit2]
- install topkg 1.1.1 [required by logs]
The following system packages will first need to be installed:
libboost-dev libopenbabel-dev librdkit-dev pkg-config python3 python3-rdkit zlib1g-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libboost-dev" "libopenbabel-dev" "librdkit-dev" "pkg-config" "python3" "python3-rdkit" "zlib1g-dev"
- Preconfiguring packages ...
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- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libpkgconf3:amd64 (1.8.1-4) ...
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- Setting up libboost-dev:amd64 (1.83.0.2+b2) ...
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- Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1+deb13u2) ...
- Setting up liblapack3:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-2.3) ...
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- Setting up pkg-config:amd64 (1.8.1-4) ...
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- running python rtupdate hooks for python3.13...
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- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
- Setting up python3-numpy (1:2.2.4+ds-1) ...
- Setting up librdkit1t64 (202503.1-4) ...
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<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.10.0 (cached)
-> retrieved bitv.2.1 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved camltc.0.9.8 (cached)
-> retrieved camlzip.1.13 (cached)
-> retrieved conf-python-3.9.0.0 (cached)
-> retrieved conf-rdkit.1 (cached)
-> installed conf-boost.1
-> retrieved cpm.12.2.0 (cached)
-> installed conf-bash.1
-> retrieved cppo.1.8.0 (cached)
-> installed conf-pkg-config.4
-> installed conf-python-3.9.0.0
-> retrieved dokeysto.4.0.2, dokeysto_camltc.4.0.2 (cached)
-> retrieved dolog.6.0.0 (cached)
-> retrieved extunix.0.4.4 (cached)
-> installed conf-zlib.1
-> installed conf-openbabel.0.1
-> retrieved lbvs_consent.2.1.2 (cached)
-> retrieved logs.0.10.0 (cached)
-> installed conf-rdkit.1
-> retrieved lwt.5.9.2 (cached)
-> installed bitv.2.1
-> installed camlp-streams.5.0.1
-> retrieved minicli.5.0.2 (cached)
-> retrieved minivpt.2.0.0 (cached)
-> retrieved num.1.6 (cached)
-> installed dolog.6.0.0
-> retrieved obuild.0.1.11 (cached)
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> retrieved ocamlbuild.0.16.1 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> installed minicli.5.0.2
-> retrieved ocplib-endian.1.2 (cached)
-> retrieved ounit2.2.2.7 (cached)
-> retrieved parmap.1.2.5 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> installed ppx_derivers.1.2.1
-> retrieved ppxlib.0.37.0 (cached)
-> retrieved qcheck.0.27, qcheck-core.0.27, qcheck-ounit.0.27 (cached)
-> retrieved seq.base (cached)
-> installed seq.base
-> retrieved sexplib0.v0.17.0 (cached)
-> retrieved stdlib-shims.0.3.0 (cached)
-> retrieved topkg.1.1.1 (cached)
-> installed cppo.1.8.0
-> installed stdlib-shims.0.3.0
-> installed parmap.1.2.5
-> installed ocaml-compiler-libs.v0.12.4
-> installed sexplib0.v0.17.0
-> installed num.1.6
-> installed ounit2.2.2.7
-> installed qcheck-core.0.27
-> installed qcheck-ounit.0.27
-> installed qcheck.0.27
-> installed ocamlfind.1.9.8
-> installed base-bytes.base
-> installed ocplib-endian.1.2
-> installed camlzip.1.13
-> installed ocamlbuild.0.16.1
-> installed lwt.5.9.2
-> installed obuild.0.1.11
-> installed minivpt.2.0.0
-> installed batteries.3.10.0
-> installed topkg.1.1.1
-> installed cpm.12.2.0
-> installed logs.0.10.0
-> installed ppxlib.0.37.0
-> installed camltc.0.9.8
-> installed extunix.0.4.4
-> installed dokeysto.4.0.2
-> installed dokeysto_camltc.4.0.2
-> installed lbvs_consent.2.1.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-12-11 08:48.18 ---> saved as "7d76fc41bba5f2d0656daab0c49d5ff0d79e540d33f4c74a4bfecd7a316415f7"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test lbvs_consent.2.1.2) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile lbvs_consent 2.1.2
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved lbvs_consent.2.1.2 (https://opam.ocaml.org/cache)
-> removed lbvs_consent.2.1.2
-> installed lbvs_consent.2.1.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-12-11 08:48.35 ---> saved as "e5b7a224ce25957debec1211db20f6baf1add6902f274e2f7099bfb93bd4a8d5"
/home/opam: (run (shell "opam reinstall --with-test --verbose lbvs_consent.2.1.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile lbvs_consent 2.1.2
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [lbvs_consent.2.1.2: extract]
-> retrieved lbvs_consent.2.1.2 (cached)
[lbvs_consent: patch] applying makefile.patch
Processing 2/4: [lbvs_consent: make obmaccs]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "obmaccs" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2)
- cd src; make
- make[1]: Entering directory '/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2/src'
- c++ -W -Wall `pkg-config --silence-errors --cflags openbabel-2.0 || pkg-config --cflags openbabel-3` ob_maccs.cpp \
- -o lbvs_consent_ob_maccs `pkg-config --silence-errors --libs openbabel-2.0 || pkg-config --libs openbabel-3` -Wl,-R/usr/lib
- In file included from /usr/include/openbabel3/openbabel/fingerprint.h:28,
- from ob_maccs.cpp:1:
- /usr/include/openbabel3/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
- 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/c++/14/bits/stl_tree.h:65,
- from /usr/include/c++/14/map:62,
- from /usr/include/openbabel3/openbabel/fingerprint.h:23:
- /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
- 131 | struct binary_function
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/openbabel3/openbabel/mol.h:48,
- from ob_maccs.cpp:2:
- /usr/include/openbabel3/openbabel/base.h: In member function 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const':
- /usr/include/openbabel3/openbabel/base.h:286:49: warning: unused parameter 'replaceNewlines' [-Wunused-parameter]
- 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";}
- | ^
- /usr/include/openbabel3/openbabel/base.h:37:20: note: in definition of macro 'UNUSED'
- 37 | # define UNUSED(x) x
- | ^
- make[1]: Leaving directory '/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2/src'
Processing 2/4: [lbvs_consent: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "lbvs_consent" "-j" "71" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2)
-> compiled lbvs_consent.2.1.2
-> removed lbvs_consent.2.1.2
Processing 4/4: [lbvs_consent: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/lbvs_consent_ecfp4.py" "/home/opam/.opam/4.14/bin/lbvs_consent_ecfp4.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "src/lbvs_consent_ob_maccs" "/home/opam/.opam/4.14/bin/lbvs_consent_ob_maccs" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2)
-> installed lbvs_consent.2.1.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-12-11 08:48.52 ---> saved as "c2c9f9a84e9e880a2f00d7822fe8cd305445567733a85af0c75be65315dd103d"
Job succeeded
2025-12-11 08:49.03: Job succeeded